SMLMView.jl

WGLMakie-based interactive array viewer for N-dimensional microscopy data, inspired by DIPimage's dipshow.

Features

N-dimensional array viewing with slice navigation
Multi-channel RGB composite display (2-3 channels)
Intensity mapping: linear, log, percentile clipping
Global or per-slice contrast stretch
Configurable keybindings via Preferences.jl
Web-deployable via WGLMakie/Bonito

Installation

using Pkg
Pkg.add(url="https://github.com/JuliaSMLM/SMLMView.jl")

Quick Start

using SMLMView

# 2D or 3D grayscale
data = rand(256, 256, 10)
smlmview(data)

# Multi-channel composite
ch1, ch2, ch3 = rand(256,256,10), rand(256,256,10), rand(256,256,10)
smlmview((ch1, ch2, ch3); names=("DAPI", "GFP", "A647"))

Keyboard Shortcuts

Key	Action
`j` / `l`	Previous / next slice
`i` / `o`	Zoom in / out
`c`	Cycle colormap
`m`	Cycle intensity mapping
`g`	Toggle global/slice stretch
`r`	Reset view
`1-9` + `1-9`	Change display dimensions
`1` / `2` / `3`	Toggle channel visibility (composite)

Documentation

Examples - Usage examples and workflows
API Reference - Complete function documentation